PH01001726G0170's details annotation
1.Annotation
ICBR annotation: hydrolase, acting on carbon-nitrogen, putative, expressed
Blast result AT1G28240 : 4.00E-161
Blast annotation: Protein of unknown function (DUF616)
2.Location
Scaffold: PH01001726
Strand: +
| Region | Start | End |
| gene | 163558 | 169470 |
| mRNA | 163558 | 169470 |
| exon | 163558 | 164276 |
| exon | 165301 | 165399 |
| exon | 166303 | 166593 |
| exon | 166665 | 166878 |
| exon | 166968 | 167077 |
| exon | 167151 | 167347 |
| exon | 167973 | 168076 |
| exon | 168323 | 168510 |
| exon | 168683 | 168882 |
| exon | 169095 | 169470 |
| CDS | 164138 | 164276 |
| CDS | 165301 | 165399 |
| CDS | 166303 | 166593 |
| CDS | 166665 | 166878 |
| CDS | 166968 | 167077 |
| CDS | 167151 | 167347 |
| CDS | 167973 | 168076 |
| CDS | 168323 | 168510 |
| CDS | 168683 | 168882 |
| CDS | 169095 | 169334 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000546 | GTnc GlycosylTransferases cellular carbohydrate metabolic process, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer, cofactor binding, acetylglucosaminyltransferase activity, endoplasmic reticulum, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04765.12 | DUF616 | 205 | 517 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.