PH01001731G0500's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G71780 : 1.50E-47
Blast annotation: -
2.Location
Scaffold: PH01001731
Strand: +
| Region | Start | End |
| gene | 305899 | 307225 |
| mRNA | 305899 | 307225 |
| exon | 305899 | 306578 |
| exon | 306724 | 307225 |
| CDS | 306207 | 306578 |
| CDS | 306724 | 306948 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000624 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, ATP hydrolysis coupled proton transport, hydrogen ion transmembrane transporter activity, HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001077 | SNARE_interactions_in_vesicular_transport |
| coexpression network | CFinderM001796 | HB-other Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.