PH01001737G0120's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G56140 : 0.00E+00
Blast annotation: Protein of unknown function (DUF399 and DUF3411)
2.Location
Scaffold: PH01001737
Strand: -
| Region | Start | End |
| gene | 63960 | 73530 |
| mRNA | 63960 | 73530 |
| exon | 63960 | 64365 |
| exon | 64564 | 65146 |
| exon | 66939 | 66978 |
| exon | 67450 | 67551 |
| exon | 67954 | 68499 |
| exon | 68698 | 68805 |
| exon | 69111 | 69641 |
| exon | 71940 | 72069 |
| exon | 72633 | 73530 |
| CDS | 63993 | 64365 |
| CDS | 64564 | 65146 |
| CDS | 66939 | 66978 |
| CDS | 67450 | 67551 |
| CDS | 67954 | 68499 |
| CDS | 68698 | 68805 |
| CDS | 69111 | 69641 |
| CDS | 71940 | 72069 |
| CDS | 72633 | 73213 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04187.12 | Cofac_haem_bdg | 127 | 347 |
| PF11891.7 | RETICULATA-like | 454 | 632 |
| PF02485.20 | Branch | 739 | 819 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008375 | acetylglucosaminyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.