PH01001744G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G15890 : 9.00E-113
Blast annotation: TRICHOME BIREFRINGENCE-LIKE 21
2.Location
Scaffold: PH01001744
Strand: -
| Region | Start | End |
| gene | 10586 | 12936 |
| mRNA | 10586 | 12936 |
| exon | 10586 | 11570 |
| exon | 11770 | 12936 |
| CDS | 10803 | 11570 |
| CDS | 11770 | 12216 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000957 | DDT Transcription_Regulator(from iTAK) CMGC_CDK-PITSLRE (from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) HD-ZIP Transcription_Regulator(from PlantTFDB) plant-type cell wall organization, Ether_lipid_metabolism Endocytosis Glycerophospholipid_metabolism extracellular region, |
| coexpression network | CFinderM001317 | Ether_lipid_metabolism Endocytosis Glycerophospholipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14416.5 | PMR5N | 58 | 110 |
| PF13839.5 | PC-Esterase | 111 | 401 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.