PH01001751G0380's details annotation
1.Annotation
ICBR annotation: OsSPL10 - SBP-box gene family member, expressed
Blast result AT1G02065 : 1.50E-28
Blast annotation: squamosa promoter binding protein-like 8
2.Location
Scaffold: PH01001751
Strand: -
| Region | Start | End |
| gene | 279930 | 283848 |
| mRNA | 279930 | 283848 |
| exon | 279930 | 281246 |
| exon | 281361 | 281542 |
| exon | 282384 | 282535 |
| exon | 282709 | 283848 |
| CDS | 280888 | 281246 |
| CDS | 281361 | 281542 |
| CDS | 282384 | 282535 |
| CDS | 282709 | 283023 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000310 | Glycine,_serine_and_threonine_metabolism flavin adenine dinucleotide binding, oxidoreductase activity, acting on CH-OH group of donors, Biotin_metabolism oxidation-reduction process, alcohol metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SBP |
| Transcription_Regulator(from PlantTFDB) | SBP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03110.13 | SBP | 109 | 183 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.