PH01001755G0180's details annotation
1.Annotation
ICBR annotation: tropinone reductase 2, putative
Blast result AT2G29150 : 3.80E-55
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01001755
Strand: -
| Region | Start | End |
| gene | 148754 | 151202 |
| mRNA | 148754 | 151202 |
| exon | 148754 | 149284 |
| exon | 150330 | 150555 |
| exon | 150768 | 150975 |
| exon | 151062 | 151202 |
| CDS | 149157 | 149284 |
| CDS | 150330 | 150555 |
| CDS | 150768 | 150975 |
| CDS | 151062 | 151147 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000981 | alternative_oxidase_activity Arachidonic_acid_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 chloroplast, structural molecule activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00106.24 | adh_short | 18 | 213 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Arachidonic acid metabolism | carbonyl reductase 2 [EC:1.1.1.184] | ko00590 | K00081 |
| Metabolism of xenobiotics by cytochrome P450 | carbonyl reductase 2 [EC:1.1.1.184] | ko00980 | K00081 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.