Annotation of co-expression genes

PH01001759G0140's details annotation

1.Annotation

ICBR annotation: response regulator receiver domain containing protein, expressed

Blast result AT5G24470 : 2.80E-32
Blast annotation: pseudo-response regulator 5

2.Location

Scaffold: PH01001759
Strand: +

RegionStartEnd
gene137735144277
mRNA137735144277
exon137735140337
exon141453141583
exon141902142015
exon142326142482
exon142594142999
exon143229144021
exon144156144277
CDS140196140337
CDS141453141583
CDS141902142015
CDS142326142482
CDS142594142999
CDS143229144021
CDS144156144266

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001631Pseudo ARR-B Transcription_Regulator(from iTAK)
transaminase activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
inorganic diphosphatase activity,
hydrogen-translocating pyrophosphatase activity,
peptidyl-prolyl cis-trans isomerase activity,
two-component response regulator activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)Pseudo ARR-B

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00072.23Response_reg381
PF06203.13CCT562604

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000156phosphorelay response regulator activity
GO:0000160phosphorelay signal transduction system
GO:0005515protein binding
GO:0006355regulation of transcription, DNA-dependent

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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