PH01001763G0090's details annotation
1.Annotation
ICBR annotation: fatty acid hydroxylase, putative, expressed
Blast result AT2G29390 : 9.70E-98
Blast annotation: sterol 4-alpha-methyl-oxidase 2-2
2.Location
Scaffold: PH01001763
Strand: -
| Region | Start | End |
| gene | 55846 | 58774 |
| mRNA | 55846 | 58774 |
| exon | 55846 | 56052 |
| exon | 56181 | 56261 |
| exon | 56360 | 56572 |
| exon | 56797 | 57056 |
| exon | 57886 | 58023 |
| exon | 58190 | 58774 |
| CDS | 55983 | 56052 |
| CDS | 56181 | 56261 |
| CDS | 56360 | 56572 |
| CDS | 56797 | 57056 |
| CDS | 57886 | 58023 |
| CDS | 58190 | 58222 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04116.12 | FA_hydroxylase | 147 | 246 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.