PH01001763G0400's details annotation
1.Annotation
ICBR annotation: cysteine synthase, mitochondrial precursor, putative, expressed
Blast result AT3G59760 : 2.00E-145
Blast annotation: O-acetylserine (thiol) lyase isoform C
2.Location
Scaffold: PH01001763
Strand: -
| Region | Start | End |
| gene | 283942 | 288037 |
| mRNA | 283942 | 288037 |
| exon | 283942 | 284152 |
| exon | 284316 | 284396 |
| exon | 284955 | 285014 |
| exon | 285322 | 285401 |
| exon | 285481 | 285532 |
| exon | 285612 | 285749 |
| exon | 285851 | 286114 |
| exon | 286756 | 286813 |
| exon | 286914 | 287023 |
| exon | 287388 | 288037 |
| CDS | 284060 | 284152 |
| CDS | 284316 | 284396 |
| CDS | 284955 | 285014 |
| CDS | 285322 | 285401 |
| CDS | 285481 | 285532 |
| CDS | 285612 | 285749 |
| CDS | 285851 | 286114 |
| CDS | 286756 | 286813 |
| CDS | 286914 | 287023 |
| CDS | 287388 | 287666 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00291.24 | PALP | 91 | 377 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Sulfur metabolism | cysteine synthase A [EC:2.5.1.47] | ko00920 | K01738 |
| Cysteine and methionine metabolism | cysteine synthase A [EC:2.5.1.47] | ko00270 | K01738 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004124 | cysteine synthase activity |
| GO:0006535 | cysteine biosynthetic process from serine |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.