PH01001766G0030's details annotation
1.Annotation
ICBR annotation: retrotransposon protein, putative, unclassified, expressed
Blast result AT3G14460 : 2.10E-26
Blast annotation: LRR and NB-ARC domains-containing disease resistance protein
2.Location
Scaffold: PH01001766
Strand: -
| Region | Start | End |
| gene | 20458 | 27619 |
| mRNA | 20458 | 27619 |
| exon | 20458 | 21423 |
| exon | 21874 | 22012 |
| exon | 22540 | 22640 |
| exon | 22683 | 24403 |
| exon | 24732 | 24954 |
| exon | 25328 | 25882 |
| exon | 26524 | 27619 |
| CDS | 21136 | 21423 |
| CDS | 21874 | 22012 |
| CDS | 22540 | 22640 |
| CDS | 22683 | 24403 |
| CDS | 24732 | 24954 |
| CDS | 25328 | 25882 |
| CDS | 26524 | 26877 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00931.21 | NB-ARC | 65 | 116 |
| PF00931.21 | NB-ARC | 119 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006952 | defense response |
| GO:0043531 | ADP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.