PH01001777G0280's details annotation
1.Annotation
ICBR annotation: pentatricopeptide, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001777
Strand: -
| Region | Start | End |
| gene | 211183 | 214708 |
| mRNA | 211183 | 214708 |
| exon | 211183 | 211678 |
| exon | 212258 | 212317 |
| exon | 212708 | 214708 |
| CDS | 211550 | 211678 |
| CDS | 212258 | 212317 |
| CDS | 212708 | 212974 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000415 | SOS_response DNA metabolic process, |
| coexpression network | CFinderM000974 | CMGC_CDKL-Os (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) Glycerolipid_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01535.19 | PPR | 3 | 32 |
| PF13041.5 | PPR_2 | 35 | 82 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.