PH01001777G0340's details annotation
1.Annotation
ICBR annotation: OsProCP2 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed
Blast result AT2G24280 : 5.90E-85
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01001777
Strand: +
| Region | Start | End |
| gene | 247236 | 248770 |
| mRNA | 247236 | 248770 |
| exon | 247236 | 247583 |
| exon | 247753 | 247908 |
| exon | 248004 | 248156 |
| exon | 248262 | 248341 |
| exon | 248452 | 248501 |
| exon | 248585 | 248770 |
| CDS | 247521 | 247583 |
| CDS | 247753 | 247908 |
| CDS | 248004 | 248156 |
| CDS | 248262 | 248341 |
| CDS | 248452 | 248501 |
| CDS | 248585 | 248721 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000209 | proton-transporting ATP synthase complex, coupling factor F(o), proton-transporting two-sector ATPase complex, proton-transporting domain, protein neddylation, Trihelix Transcription_Regulator(from PlantTFDB) cellular protein modification process, ATP hydrolysis coupled proton transport, ATP synthesis coupled proton transport, apoplast, Ubiquitin_mediated_proteolysis small protein activating enzyme activity, nutrient reservoir activity, hydrogen ion transmembrane transporter activity, manganese ion binding, serine-type peptidase activity, |
| coexpression network | CFinderM001157 | Porphyrin_and_chlorophyll_metabolism tetrapyrrole biosynthetic process, chlorophyll biosynthetic process, proteolysis, metal ion binding, diacylglycerol_O-acyltransferase_activity magnesium chelatase activity, porphobilinogen synthase activity, serine-type peptidase activity, serine-type carboxypeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05577.11 | Peptidase_S28 | 1 | 189 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006508 | proteolysis |
| GO:0008236 | serine-type peptidase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.