PH01001778G0300's details annotation
1.Annotation
ICBR annotation: OsFBT13 - F-box and tubby domain containing protein, expressed
Blast result AT1G43640 : 2.00E-95
Blast annotation: tubby like protein 5
2.Location
Scaffold: PH01001778
Strand: -
| Region | Start | End |
| gene | 243326 | 247325 |
| mRNA | 243326 | 247325 |
| exon | 243326 | 244770 |
| exon | 245015 | 245149 |
| exon | 245220 | 245352 |
| exon | 246451 | 246538 |
| exon | 246708 | 246789 |
| exon | 246856 | 247325 |
| CDS | 244374 | 244770 |
| CDS | 245015 | 245149 |
| CDS | 245220 | 245352 |
| CDS | 246451 | 246538 |
| CDS | 246708 | 246789 |
| CDS | 246856 | 247055 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | TUB |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01167.17 | Tub | 94 | 339 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.