Annotation of co-expression genes

PH01001786G0250's details annotation

1.Annotation

ICBR annotation: ZOS3-04 - C2H2 zinc finger protein, expressed

Blast result AT5G66730 : 5.90E-94
Blast annotation: C2H2-like zinc finger protein

2.Location

Scaffold: PH01001786
Strand: +

RegionStartEnd
gene166083171400
mRNA166083171400
exon166083167566
exon167688168084
exon168190168404
exon169075171400
CDS167560167566
CDS167688168084
CDS168190168404
CDS169075169934

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000448COPII vesicle coat,
Protein_processing_in_endoplasmic_reticulum
Protein_export

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C2H2
Transcription_Regulator(from PlantTFDB)C2H2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00096.25zf-C2H22244

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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