Annotation of co-expression genes

PH01001792G0070's details annotation

1.Annotation

ICBR annotation: 40S ribosomal protein S24, putative, expressed

Blast result AT3G04920 : 1.40E-41
Blast annotation: Ribosomal protein S24e family protein

2.Location

Scaffold: PH01001792
Strand: -

RegionStartEnd
gene4657547582
mRNA4657547582
exon4657546992
exon4708847582
CDS4677446992
CDS4708847213

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000166Ribosome
translation,
Ribosome
structural constituent of ribosome,
intracellular,
mitochondrial envelope,
cytochrome-c oxidase activity,
polysaccharide_binding
ubiquitin thiolesterase activity,
Oxidative_phosphorylation
ubiquitin-dependent protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF01282.18Ribosomal_S24e29101

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ribosomesmall subunit ribosomal protein S24eko03011K02974

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003735structural constituent of ribosome
GO:0005622intracellular
GO:0005840ribosome
GO:0006412translation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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