PH01001793G0050's details annotation
1.Annotation
ICBR annotation: chromosome segregation protein, putative, expressed
Blast result AT2G14835 : 3.30E-09
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01001793
Strand: -
| Region | Start | End |
| gene | 36451 | 42354 |
| mRNA | 36451 | 42354 |
| exon | 36451 | 36961 |
| exon | 37430 | 37439 |
| exon | 38130 | 38239 |
| exon | 38587 | 38667 |
| exon | 40838 | 40933 |
| exon | 41011 | 41154 |
| exon | 42166 | 42354 |
| CDS | 36767 | 36961 |
| CDS | 37430 | 37439 |
| CDS | 38130 | 38239 |
| CDS | 38587 | 38667 |
| CDS | 40838 | 40933 |
| CDS | 41011 | 41154 |
| CDS | 42166 | 42318 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000540 | condensin_complex CK1_CK1 (from iTAK) mitotic_chromosome_condensation |
| coexpression network | CFinderM000791 | condensin_complex GT1 GlycosylTransferases ferric iron binding, mitotic_chromosome_condensation iron-sulfur cluster assembly, binding, protein binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000796 | condensin complex |
| GO:0007076 | mitotic chromosome condensation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.