PH01001797G0400's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001797
Strand: +
| Region | Start | End |
| gene | 197285 | 200967 |
| mRNA | 197285 | 200967 |
| exon | 197285 | 198049 |
| exon | 199726 | 199757 |
| exon | 199877 | 200967 |
| CDS | 197713 | 198049 |
| CDS | 199726 | 199757 |
| CDS | 199877 | 200800 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001062 | HSF Transcription_Regulator(from PlantTFDB) NAD+ kinase activity, diacylglycerol kinase activity, protein kinase C-activating G-protein coupled receptor signaling pathway, |
| coexpression network | CFinderM001462 | ATP-dependent peptidase activity, cellular process, Endocytosis |
| coexpression network | CFinderM001809 | Lipoic_acid_metabolism TKL-Pl-6 (from iTAK) chloroplast, lipoate biosynthetic process, lipoate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.