PH01001798G0090's details annotation
1.Annotation
ICBR annotation: fatty acid hydroxylase, putative, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001798
Strand: -
| Region | Start | End |
| gene | 48990 | 52828 |
| mRNA | 48990 | 52828 |
| exon | 48990 | 49393 |
| exon | 49482 | 49562 |
| exon | 49669 | 49881 |
| exon | 49969 | 50088 |
| exon | 50259 | 50404 |
| exon | 52175 | 52312 |
| exon | 52443 | 52828 |
| CDS | 49324 | 49393 |
| CDS | 49482 | 49562 |
| CDS | 49669 | 49881 |
| CDS | 49969 | 50088 |
| CDS | 50259 | 50404 |
| CDS | 52175 | 52312 |
| CDS | 52443 | 52475 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001812 | intracellular transport, 5'-3' exoribonuclease activity, nucleobase-containing compound metabolic process, exonuclease activity, Ribosome_biogenesis_in_eukaryotes RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.