Annotation of co-expression genes

PH01001800G0210's details annotation

1.Annotation

ICBR annotation: Myb transcription factor, putative, expressed

Blast result AT5G56840 : 1.30E-39
Blast annotation: myb-like transcription factor family protein

2.Location

Scaffold: PH01001800
Strand: +

RegionStartEnd
gene108289110753
mRNA108289110753
exon108289109404
exon109976110172
exon110267110753
CDS109071109404
CDS109976110172
CDS110267110611

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001758nuclear pore,
MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)MYB-related
Transcription_Regulator(from PlantTFDB)MYB_related

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00249.30Myb_DNA-binding114158

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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