PH01001802G0040's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G46920 : 3.80E-35
Blast annotation: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
2.Location
Scaffold: PH01001802
Strand: +
| Region | Start | End |
| gene | 35221 | 39610 |
| mRNA | 35221 | 39610 |
| exon | 35221 | 38670 |
| exon | 38760 | 38908 |
| exon | 38987 | 39055 |
| exon | 39151 | 39220 |
| exon | 39362 | 39610 |
| CDS | 37269 | 38670 |
| CDS | 38760 | 38908 |
| CDS | 38987 | 39055 |
| CDS | 39151 | 39220 |
| CDS | 39362 | 39579 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000480 | TKL-Pl-6 (from iTAK) ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) glycerol metabolic process, glycerophosphodiester phosphodiesterase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 569 | 622 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.