PH01001802G0060's details annotation
1.Annotation
ICBR annotation: protein kinase domain containing protein, expressed
Blast result AT3G46920 : 3.30E-56
Blast annotation: Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain
2.Location
Scaffold: PH01001802
Strand: +
| Region | Start | End |
| gene | 41933 | 47326 |
| mRNA | 41933 | 47326 |
| exon | 41933 | 43340 |
| exon | 43378 | 43559 |
| exon | 43699 | 43743 |
| exon | 44692 | 44814 |
| exon | 44917 | 45004 |
| exon | 45133 | 45290 |
| exon | 46118 | 46246 |
| exon | 46576 | 47326 |
| CDS | 42836 | 43340 |
| CDS | 43378 | 43559 |
| CDS | 43699 | 43743 |
| CDS | 44692 | 44814 |
| CDS | 44917 | 45004 |
| CDS | 45133 | 45290 |
| CDS | 46118 | 46246 |
| CDS | 46576 | 46665 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 245 | 358 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.