PH01001807G0330's details annotation
1.Annotation
ICBR annotation: RNA-binding protein Luc7-like, putative, expressed
Blast result AT5G51410 : 2.10E-69
Blast annotation: LUC7 N_terminus domain-containing protein
2.Location
Scaffold: PH01001807
Strand: +
| Region | Start | End |
| gene | 178521 | 185261 |
| mRNA | 178521 | 185261 |
| exon | 178521 | 178702 |
| exon | 179029 | 179068 |
| exon | 180083 | 180209 |
| exon | 181810 | 181890 |
| exon | 181958 | 182152 |
| exon | 182258 | 182467 |
| exon | 182544 | 182893 |
| exon | 184283 | 185261 |
| CDS | 178660 | 178702 |
| CDS | 179029 | 179068 |
| CDS | 180083 | 180209 |
| CDS | 181810 | 181890 |
| CDS | 181958 | 182152 |
| CDS | 182258 | 182467 |
| CDS | 182544 | 182893 |
| CDS | 184283 | 184436 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03194.14 | LUC7 | 73 | 248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.