PH01001808G0250's details annotation
1.Annotation
ICBR annotation: SRPK4, putative, expressed
Blast result AT3G53030 : 0.00E+00
Blast annotation: ser/arg-rich protein kinase 4
2.Location
Scaffold: PH01001808
Strand: +
| Region | Start | End |
| gene | 156032 | 161038 |
| mRNA | 156032 | 161038 |
| exon | 156032 | 156704 |
| exon | 157188 | 158108 |
| exon | 159457 | 159492 |
| exon | 159925 | 159972 |
| exon | 160064 | 161038 |
| CDS | 156456 | 156704 |
| CDS | 157188 | 158108 |
| CDS | 159457 | 159492 |
| CDS | 159925 | 159972 |
| CDS | 160064 | 160507 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001328 | GT32 GlycosylTransferases Golgi stack, CMGC_SRPK (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 61 | 200 |
| PF00069.24 | Pkinase | 317 | 492 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.