PH01001810G0440's details annotation
1.Annotation
ICBR annotation: fasciclin domain containing protein, expressed
Blast result AT1G56260 : 8.50E-35
Blast annotation: -
2.Location
Scaffold: PH01001810
Strand: -
| Region | Start | End |
| gene | 215407 | 219981 |
| mRNA | 215407 | 219981 |
| exon | 215407 | 216095 |
| exon | 216208 | 216299 |
| exon | 217414 | 217489 |
| exon | 218301 | 219981 |
| CDS | 215735 | 216095 |
| CDS | 216208 | 216299 |
| CDS | 217414 | 217489 |
| CDS | 218301 | 218878 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000831 | ER_membrane_protein_complex Protein_export branched chain family amino acid biosynthetic process, signal peptide processing, dephosphorylation, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity, acetolactate synthase activity, peptidase activity, phosphatase activity, protein dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF15490.5 | Ten1_2 | 7 | 118 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.