PH01001811G0310's details annotation
1.Annotation
ICBR annotation: STE_MEKK_ste11_MAP3K.12 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Blast result AT4G08500 : 6.60E-74
Blast annotation: MAPK/ERK kinase kinase 1
2.Location
Scaffold: PH01001811
Strand: -
| Region | Start | End |
| gene | 187923 | 193667 |
| mRNA | 187923 | 193667 |
| exon | 187923 | 188510 |
| exon | 189205 | 189312 |
| exon | 189813 | 189872 |
| exon | 189986 | 190061 |
| exon | 190312 | 190469 |
| exon | 190596 | 190658 |
| exon | 190783 | 190867 |
| exon | 191610 | 193667 |
| CDS | 188400 | 188510 |
| CDS | 189205 | 189312 |
| CDS | 189813 | 189872 |
| CDS | 189986 | 190061 |
| CDS | 190312 | 190469 |
| CDS | 190596 | 190658 |
| CDS | 190783 | 190867 |
| CDS | 191610 | 191740 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000554 | EIL Transcription_Regulator(from PlantTFDB) GT20 GlycosylTransferases STE_STE11 (from iTAK) PHD Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001417 | STE_STE11 (from iTAK) CAMK_CDPK (from iTAK) Starch_and_sucrose_metabolism cell wall macromolecule catabolic process, trehalose biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 37 | 223 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.