PH01001812G0170's details annotation
1.Annotation
ICBR annotation: cell cycle control protein, putative, expressed
Blast result AT5G46150 : 9.00E-112
Blast annotation: LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
2.Location
Scaffold: PH01001812
Strand: +
| Region | Start | End |
| gene | 111709 | 117582 |
| mRNA | 111709 | 117582 |
| exon | 111709 | 112424 |
| exon | 112991 | 113052 |
| exon | 113311 | 113427 |
| exon | 114005 | 114121 |
| exon | 114357 | 114427 |
| exon | 114541 | 114835 |
| exon | 114957 | 115246 |
| exon | 115468 | 117582 |
| CDS | 112346 | 112424 |
| CDS | 112991 | 113052 |
| CDS | 113311 | 113427 |
| CDS | 114005 | 114121 |
| CDS | 114357 | 114427 |
| CDS | 114541 | 114835 |
| CDS | 114957 | 115246 |
| CDS | 115468 | 115522 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000814 | DDT Transcription_Regulator(from iTAK) Others Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03381.14 | CDC50 | 84 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.