Annotation of co-expression genes

PH01001813G0270's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G17980 : 0.00E+00
Blast annotation: poly(A) polymerase 1

2.Location

Scaffold: PH01001813
Strand: +

RegionStartEnd
gene184773191669
mRNA184773191669
exon184773186371
exon186471186566
exon186641186748
exon187138187200
exon187274187435
exon187680187793
exon188150188479
exon189312189476
exon189551191669
CDS186261186371
CDS186471186566
CDS186641186748
CDS187138187200
CDS187274187435
CDS187680187793
CDS188150188479
CDS189312189476
CDS189551190543

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04928.16PAP_central14217
PF01909.22NTP_transf_293160
PF04928.16PAP_central219343
PF04926.14PAP_RNA-bind346404

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
mRNA surveillance pathwaypoly(A) polymerase [EC:2.7.7.19]ko03015K14376

10.Gene Ontology

GO AccessionGO Annotation
GO:0003723RNA binding
GO:0004652polynucleotide adenylyltransferase activity
GO:0005634nucleus
GO:0016779nucleotidyltransferase activity
GO:0031123RNA 3'-end processing
GO:0043631RNA polyadenylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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