PH01001814G0130's details annotation
1.Annotation
ICBR annotation: tRNA synthetase class I, putative, expressed
Blast result AT4G10320 : 6.30E-60
Blast annotation: tRNA synthetase class I (I, L, M and V) family protein
2.Location
Scaffold: PH01001814
Strand: +
| Region | Start | End |
| gene | 92041 | 95673 |
| mRNA | 92041 | 95673 |
| exon | 92041 | 92286 |
| exon | 92737 | 92800 |
| exon | 92885 | 92952 |
| exon | 93309 | 93431 |
| exon | 94321 | 94386 |
| exon | 94922 | 95027 |
| exon | 95154 | 95245 |
| exon | 95324 | 95673 |
| CDS | 92173 | 92286 |
| CDS | 92737 | 92800 |
| CDS | 92885 | 92952 |
| CDS | 93309 | 93431 |
| CDS | 94321 | 94386 |
| CDS | 94922 | 95027 |
| CDS | 95154 | 95245 |
| CDS | 95324 | 95425 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000713 | signal peptide processing, tRNA modification, tRNA_guanylyltransferase_activity F-actin capping protein complex, actin cytoskeleton organization, WASH_complex |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.