PH01001816G0060's details annotation
1.Annotation
ICBR annotation: digestive organ expansion factor, putative, expressed
Blast result AT1G17690 : 1.10E-09
Blast annotation: -
2.Location
Scaffold: PH01001816
Strand: -
| Region | Start | End |
| gene | 42966 | 46795 |
| mRNA | 42966 | 46795 |
| exon | 42966 | 43213 |
| exon | 43905 | 44057 |
| exon | 44234 | 44314 |
| exon | 44486 | 44597 |
| exon | 45332 | 46795 |
| CDS | 43160 | 43213 |
| CDS | 43905 | 44057 |
| CDS | 44234 | 44314 |
| CDS | 44486 | 44597 |
| CDS | 45332 | 45708 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001810 | mitosis, spliceosomal complex, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06862.11 | UTP25 | 163 | 247 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.