PH01001821G0100's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G16270 : 3.00E-164
Blast annotation: ENTH/VHS family protein
2.Location
Scaffold: PH01001821
Strand: -
| Region | Start | End |
| gene | 68635 | 74668 |
| mRNA | 68635 | 74668 |
| exon | 68635 | 68834 |
| exon | 68890 | 69816 |
| exon | 70019 | 70174 |
| exon | 71153 | 71908 |
| exon | 73398 | 74668 |
| CDS | 68727 | 68834 |
| CDS | 68890 | 69816 |
| CDS | 70019 | 70174 |
| CDS | 71153 | 71908 |
| CDS | 73398 | 73604 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000655 | cell communication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01417.19 | ENTH | 20 | 126 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.