PH01001827G0190's details annotation
1.Annotation
ICBR annotation: nucleolar protein NOP5-1, putative
Blast result AT3G05060 : 0.00E+00
Blast annotation: NOP56-like pre RNA processing ribonucleoprotein
2.Location
Scaffold: PH01001827
Strand: +
| Region | Start | End |
| gene | 105060 | 108914 |
| mRNA | 105060 | 108914 |
| exon | 105060 | 105435 |
| exon | 105528 | 105569 |
| exon | 106299 | 106478 |
| exon | 106557 | 106721 |
| exon | 106914 | 107114 |
| exon | 107192 | 107488 |
| exon | 107712 | 107912 |
| exon | 107995 | 108129 |
| exon | 108517 | 108914 |
| CDS | 105358 | 105435 |
| CDS | 105528 | 105569 |
| CDS | 106299 | 106478 |
| CDS | 106557 | 106721 |
| CDS | 106914 | 107114 |
| CDS | 107192 | 107488 |
| CDS | 107712 | 107912 |
| CDS | 107995 | 108129 |
| CDS | 108517 | 108906 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08156.12 | NOP5NT | 2 | 65 |
| PF01798.17 | Nop | 166 | 394 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | nucleolar protein 58 | ko03008 | K14565 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.