Annotation of co-expression genes

PH01001829G0120's details annotation

1.Annotation

ICBR annotation: pleiotropic drug resistance protein, putative, expressed

Blast result AT2G26910 : 0
Blast annotation: pleiotropic drug resistance 4

2.Location

Scaffold: PH01001829
Strand: +

RegionStartEnd
gene6017372081
mRNA6017372081
exon6017361051
exon6157561786
exon6245262572
exon6299363100
exon6340663569
exon6361063715
exon6379863851
exon6419864303
exon6443064731
exon6481465095
exon6621866578
exon6667866898
exon6706167144
exon6751567645
exon6906169288
exon6938469555
exon6964369897
exon7046772081
CDS6088161051
CDS6157561786
CDS6245262572
CDS6299363100
CDS6340663569
CDS6361063715
CDS6379863851
CDS6419864303
CDS6443064731
CDS6481465095
CDS6621866578
CDS6667866898
CDS6706167144
CDS6751567645
CDS6906169288
CDS6938469555
CDS6964369897
CDS7046770739

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000808RLK-Pelle_LRR-Xa (from iTAK)
peroxisomal membrane,
membrane,
SBP Transcription_Regulator(from PlantTFDB)
protein_import_into_peroxisome_matrix
negative_regulation_of_transcription,_DNA-templated
ATPase activity,
transcription_corepressor_activity
nucleoside-triphosphatase activity,
coexpression networkCFinderM001394membrane,
RLK-Pelle_LRR-Xa (from iTAK)
SBP Transcription_Regulator(from PlantTFDB)
ATPase activity,
nucleoside-triphosphatase activity,
3'-5' exonuclease activity,
nucleobase-containing compound metabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14510.5ABC_trans_N106162
PF00005.26ABC_tran194363
PF00005.26ABC_tran559695
PF01061.23ABC2_membrane766808
PF01061.23ABC2_membrane8401053

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0016020membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.