Annotation of co-expression genes

PH01001834G0180's details annotation

1.Annotation

ICBR annotation: protein transport protein SEC61 subunit gamma, putative, expressed

Blast result AT5G50460 : 2.10E-23
Blast annotation: secE/sec61-gamma protein transport protein

2.Location

Scaffold: PH01001834
Strand: -

RegionStartEnd
gene141163142532
mRNA141163142532
exon141163141899
exon141991142532
CDS141784141899
CDS141991142084

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000860protein targeting,
drug_binding
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00584.19SecE1365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exportprotein transport protein SEC61 subunit gamma and related proteinsko03060K07342
Protein processing in endoplasmic reticulumprotein transport protein SEC61 subunit gamma and related proteinsko04141K07342
Phagosomeprotein transport protein SEC61 subunit gamma and related proteinsko04145K07342

10.Gene Ontology

GO AccessionGO Annotation
GO:0006605protein targeting
GO:0006886intracellular protein transport
GO:0015031protein transport
GO:0015450P-P-bond-hydrolysis-driven protein transmembrane transporter activity
GO:0016020membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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