PH01001834G0370's details annotation
1.Annotation
ICBR annotation: OsSPL5 - SBP-box gene family member, expressed
Blast result AT1G02065 : 3.10E-41
Blast annotation: squamosa promoter binding protein-like 8
2.Location
Scaffold: PH01001834
Strand: -
| Region | Start | End |
| gene | 290182 | 294145 |
| mRNA | 290182 | 294145 |
| exon | 290182 | 291148 |
| exon | 291860 | 292029 |
| exon | 293063 | 294145 |
| CDS | 290775 | 291148 |
| CDS | 291860 | 292029 |
| CDS | 293063 | 293754 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000039 | bHLH Transcription_Regulator(from PlantTFDB) CBM22 Carbohydrate-Binding_Modules GH10 Glycoside_Hydrolases SBP Transcription_Regulator(from PlantTFDB) protein dimerization activity, negative regulation of catalytic activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SBP |
| Transcription_Regulator(from PlantTFDB) | SBP |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03110.13 | SBP | 185 | 258 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.