PH01001835G0300's details annotation
1.Annotation
ICBR annotation: HNH endonuclease domain-containing protein, putative, expressed
Blast result AT2G23840 : 5.00E-82
Blast annotation: HNH endonuclease
2.Location
Scaffold: PH01001835
Strand: +
| Region | Start | End |
| gene | 240209 | 242705 |
| mRNA | 240209 | 242705 |
| exon | 240209 | 240874 |
| exon | 241298 | 241352 |
| exon | 241486 | 241560 |
| exon | 241657 | 241748 |
| exon | 242029 | 242110 |
| exon | 242281 | 242364 |
| exon | 242464 | 242705 |
| CDS | 240546 | 240874 |
| CDS | 241298 | 241352 |
| CDS | 241486 | 241560 |
| CDS | 241657 | 241748 |
| CDS | 242029 | 242110 |
| CDS | 242281 | 242364 |
| CDS | 242464 | 242583 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000507 | iron-sulfur cluster binding, electron carrier activity, iron ion binding, endonuclease activity, cellular metabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14279.5 | HNH_5 | 183 | 234 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004519 | endonuclease activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.