PH01001845G0140's details annotation
1.Annotation
ICBR annotation: nicotinate-nucleotide pyrophosphorylase, putative, expressed
Blast result AT2G01350 : 7.70E-55
Blast annotation: quinolinate phoshoribosyltransferase
2.Location
Scaffold: PH01001845
Strand: +
| Region | Start | End |
| gene | 75633 | 83023 |
| mRNA | 75633 | 83023 |
| exon | 75633 | 76205 |
| exon | 78597 | 78660 |
| exon | 78767 | 78849 |
| exon | 79199 | 79282 |
| exon | 79384 | 79536 |
| exon | 82632 | 83023 |
| CDS | 76176 | 76205 |
| CDS | 78597 | 78660 |
| CDS | 78767 | 78849 |
| CDS | 79199 | 79282 |
| CDS | 79384 | 79536 |
| CDS | 82632 | 82748 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02749.15 | QRPTase_N | 9 | 52 |
| PF01729.18 | QRPTase_C | 54 | 139 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Nicotinate and nicotinamide metabolism | nicotinate-nucleotide pyrophosphorylase (carboxylating) [EC:2.4.2.19] | ko00760 | K00767 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004514 | nicotinate-nucleotide diphosphorylase (carboxylating) activity |
| GO:0009435 | NAD biosynthetic process |
| GO:0016763 | transferase activity, transferring pentosyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.