PH01001845G0190's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G42550 : 7.00E-178
Blast annotation: plastid movement impaired1
2.Location
Scaffold: PH01001845
Strand: +
| Region | Start | End |
| gene | 105974 | 109350 |
| mRNA | 105974 | 109350 |
| exon | 105974 | 109350 |
| CDS | 106636 | 109242 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000189 | phosphate ion transport, cellular carbohydrate metabolic process, malate metabolic process, L-malate dehydrogenase activity, inorganic phosphate transmembrane transporter activity, malate dehydrogenase activity, Carbon_fixation_in_photosynthetic_organisms Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glyoxylate_and_dicarboxylate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10358.8 | NT-C2 | 129 | 279 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.