PH01001852G0170's details annotation
1.Annotation
ICBR annotation: ataxin-2 C-terminal region family protein, expressed
Blast result AT2G26280 : 2.20E-62
Blast annotation: CTC-interacting domain 7
2.Location
Scaffold: PH01001852
Strand: -
| Region | Start | End |
| gene | 72339 | 77866 |
| mRNA | 72339 | 77866 |
| exon | 72339 | 72684 |
| exon | 73377 | 73498 |
| exon | 74629 | 74699 |
| exon | 74795 | 75185 |
| exon | 76651 | 76736 |
| exon | 76817 | 77866 |
| CDS | 72408 | 72684 |
| CDS | 73377 | 73498 |
| CDS | 74629 | 74699 |
| CDS | 74795 | 75185 |
| CDS | 76651 | 76736 |
| CDS | 76817 | 77414 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000474 | CAMK_CAMKL-CHK1 (from iTAK) eukaryotic translation initiation factor 3 complex, |
| coexpression network | CFinderM000816 | CMGC_CDK-CRK7-CDK9 (from iTAK) |
| coexpression network | CFinderM000966 | TKL-Pl-1 (from iTAK) CMGC_CDK-CRK7-CDK9 (from iTAK) protein phosphorylation, chloride transport, CAMK_CAMKL-CHK1 (from iTAK) transferase activity, transferring phosphorus-containing groups, voltage-gated chloride channel activity, protein kinase activity, ion channel activity, ATP binding, |
| coexpression network | CFinderM000967 | TKL-Pl-1 (from iTAK) GH17 Glycoside_Hydrolases phosphate-containing compound metabolic process, phospholipid transport, magnesium ion binding, |
| coexpression network | CFinderM001469 | FAR1 Transcription_Regulator(from PlantTFDB) CMGC_CDK-CRK7-CDK9 (from iTAK) RNA_degradation membrane, |
| coexpression network | CFinderM001709 | GH17 Glycoside_Hydrolases Arginine_and_proline_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07145.14 | PAM2 | 14 | 28 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.