PH01001852G0480's details annotation
1.Annotation
ICBR annotation: copper-transporting ATPase PAA1, putative, expressed
Blast result AT5G21930 : 0.00E+00
Blast annotation: P-type ATPase of Arabidopsis 2
2.Location
Scaffold: PH01001852
Strand: +
| Region | Start | End |
| gene | 284212 | 292470 |
| mRNA | 284212 | 292470 |
| exon | 284212 | 285617 |
| exon | 285772 | 285849 |
| exon | 286345 | 286442 |
| exon | 286517 | 286570 |
| exon | 286915 | 287001 |
| exon | 287212 | 287376 |
| exon | 288664 | 288774 |
| exon | 289157 | 289225 |
| exon | 289304 | 289413 |
| exon | 289510 | 289615 |
| exon | 289919 | 289985 |
| exon | 290212 | 290291 |
| exon | 290393 | 290847 |
| exon | 291152 | 291326 |
| exon | 291631 | 291762 |
| exon | 291848 | 291998 |
| exon | 292085 | 292470 |
| CDS | 284993 | 285617 |
| CDS | 285772 | 285849 |
| CDS | 286345 | 286442 |
| CDS | 286517 | 286570 |
| CDS | 286915 | 287001 |
| CDS | 287212 | 287376 |
| CDS | 288664 | 288774 |
| CDS | 289157 | 289225 |
| CDS | 289304 | 289413 |
| CDS | 289510 | 289615 |
| CDS | 289919 | 289985 |
| CDS | 290212 | 290291 |
| CDS | 290393 | 290847 |
| CDS | 291152 | 291326 |
| CDS | 291631 | 291762 |
| CDS | 291848 | 291998 |
| CDS | 292085 | 292203 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00403.25 | HMA | 82 | 142 |
| PF00122.19 | E1-E2_ATPase | 341 | 527 |
| PF00702.25 | Hydrolase | 543 | 775 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0006812 | cation transport |
| GO:0016021 | integral to membrane |
| GO:0019829 | cation-transporting ATPase activity |
| GO:0030001 | metal ion transport |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.