PH01001857G0050's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT1G79190 : 0.00E+00
Blast annotation: ARM repeat superfamily protein
2.Location
Scaffold: PH01001857
Strand: +
| Region | Start | End |
| gene | 22675 | 38295 |
| mRNA | 22675 | 38295 |
| exon | 22675 | 23394 |
| exon | 24723 | 24977 |
| exon | 25017 | 25191 |
| exon | 25604 | 25912 |
| exon | 26093 | 26182 |
| exon | 26680 | 27126 |
| exon | 27217 | 27324 |
| exon | 27541 | 27671 |
| exon | 27750 | 27882 |
| exon | 27993 | 28356 |
| exon | 28488 | 28996 |
| exon | 29111 | 29290 |
| exon | 29374 | 29532 |
| exon | 29892 | 29966 |
| exon | 30634 | 30711 |
| exon | 33202 | 33319 |
| exon | 34149 | 34342 |
| exon | 34922 | 35134 |
| exon | 36293 | 38295 |
| CDS | 23180 | 23394 |
| CDS | 24723 | 24977 |
| CDS | 25017 | 25191 |
| CDS | 25604 | 25912 |
| CDS | 26093 | 26182 |
| CDS | 26680 | 27126 |
| CDS | 27217 | 27324 |
| CDS | 27541 | 27671 |
| CDS | 27750 | 27882 |
| CDS | 27993 | 28356 |
| CDS | 28488 | 28996 |
| CDS | 29111 | 29290 |
| CDS | 29374 | 29532 |
| CDS | 29892 | 29966 |
| CDS | 30634 | 30711 |
| CDS | 33202 | 33319 |
| CDS | 34149 | 34342 |
| CDS | 34922 | 35134 |
| CDS | 36293 | 36931 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.