PH01001857G0270's details annotation
1.Annotation
ICBR annotation: transcription factor MYC7E, putative, expressed
Blast result AT1G32640 : 1.20E-90
Blast annotation: Basic helix-loop-helix (bHLH) DNA-binding family protein
2.Location
Scaffold: PH01001857
Strand: -
| Region | Start | End |
| gene | 167939 | 171597 |
| mRNA | 167939 | 171597 |
| exon | 167939 | 168707 |
| exon | 168824 | 169405 |
| exon | 169953 | 171597 |
| CDS | 168192 | 168707 |
| CDS | 168824 | 169405 |
| CDS | 169953 | 170549 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | bHLH |
| Transcription_Regulator(from PlantTFDB) | bHLH |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14215.5 | bHLH-MYC_N | 35 | 199 |
| PF00010.25 | HLH | 394 | 435 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Plant hormone signal transduction | transcription factor MYC2 | ko04075 | K13422 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.