PH01001865G0050's details annotation
1.Annotation
ICBR annotation: eukaryotic translation initiation factor 2 subunit beta, putative, expressed
Blast result AT5G20920 : 5.60E-96
Blast annotation: eukaryotic translation initiation factor 2 beta subunit
2.Location
Scaffold: PH01001865
Strand: +
| Region | Start | End |
| gene | 29555 | 34985 |
| mRNA | 29555 | 34985 |
| exon | 29555 | 29843 |
| exon | 32438 | 32543 |
| exon | 32619 | 32674 |
| exon | 32766 | 32817 |
| exon | 32901 | 33001 |
| exon | 33396 | 33541 |
| exon | 33647 | 33789 |
| exon | 33980 | 34065 |
| exon | 34725 | 34985 |
| CDS | 29799 | 29843 |
| CDS | 32438 | 32543 |
| CDS | 32619 | 32674 |
| CDS | 32766 | 32817 |
| CDS | 32901 | 33001 |
| CDS | 33396 | 33541 |
| CDS | 33647 | 33789 |
| CDS | 33980 | 34065 |
| CDS | 34725 | 34796 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000840 | vesicle docking involved in exocytosis, RNA modification, pseudouridine synthesis, translational initiation, RNA_transport pseudouridine synthase activity, translation initiation factor activity, vesicle-mediated transport, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01873.16 | eIF-5_eIF-2B | 140 | 248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | translation initiation factor 2 subunit 2 | ko03013 | K03238 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003743 | translation initiation factor activity |
| GO:0006413 | translational initiation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.