Annotation of co-expression genes

PH01001868G0090's details annotation

1.Annotation

ICBR annotation: phospholipase D, putative, expressed

Blast result AT3G15730 : 0
Blast annotation: phospholipase D alpha 1

2.Location

Scaffold: PH01001868
Strand: +

RegionStartEnd
gene5763262055
mRNA5763262055
exon5763258783
exon5925959756
exon5981260266
exon6034461233
exon6131762055
CDS5867658783
CDS5925959756
CDS5981260266
CDS6034461233
CDS6131761771

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00168.29C216133
PF00614.21PLDc319354
PF13091.5PLDc_2632675
PF12357.7PLD_C722791

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Glycerophospholipid metabolismphospholipase D1/2 [EC:3.1.4.4]ko00564K01115
Ether lipid metabolismphospholipase D1/2 [EC:3.1.4.4]ko00565K01115
Endocytosisphospholipase D1/2 [EC:3.1.4.4]ko04144K01115

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004630phospholipase D activity
GO:0005509calcium ion binding
GO:0005515protein binding
GO:0008152metabolic process
GO:0016020membrane
GO:0046470phosphatidylcholine metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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