PH01001874G0240's details annotation
1.Annotation
ICBR annotation: SET domain containing protein
Blast result AT4G30860 : 2.00E-80
Blast annotation: SET domain group 4
2.Location
Scaffold: PH01001874
Strand: -
| Region | Start | End |
| gene | 154697 | 164523 |
| mRNA | 154697 | 164523 |
| exon | 154697 | 155373 |
| exon | 155636 | 155954 |
| exon | 157125 | 157205 |
| exon | 157307 | 157478 |
| exon | 159001 | 159079 |
| exon | 159612 | 159705 |
| exon | 160520 | 160602 |
| exon | 161554 | 161580 |
| exon | 163727 | 164523 |
| CDS | 155170 | 155373 |
| CDS | 155636 | 155954 |
| CDS | 157125 | 157205 |
| CDS | 157307 | 157478 |
| CDS | 159001 | 159079 |
| CDS | 159612 | 159705 |
| CDS | 160520 | 160602 |
| CDS | 161554 | 161580 |
| CDS | 163727 | 163939 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | SET |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00856.27 | SET | 144 | 249 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Lysine degradation | histone-lysine N-methyltransferase SETD2 [EC:2.1.1.43] | ko00310 | K11423 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0018024 | histone-lysine N-methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.