Annotation of co-expression genes

PH01001874G0340's details annotation

1.Annotation

ICBR annotation: eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed

Blast result AT5G57870 : 0
Blast annotation: MIF4G domain-containing protein / MA3 domain-containing protein

2.Location

Scaffold: PH01001874
Strand: -

RegionStartEnd
gene247741252281
mRNA247741252281
exon247741249025
exon249496249738
exon249971250321
exon250408250495
exon250625250695
exon251241251441
exon251620251697
exon252003252281
CDS247997249025
CDS249496249738
CDS249971250321
CDS250408250495
CDS250625250695
CDS251241251441
CDS251620251697
CDS252003252110

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02854.18MIF4G148373
PF02847.16MA3555664

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
RNA transporttranslation initiation factor 4Gko03013K03260

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003723RNA binding
GO:0005488binding
GO:0005515protein binding
GO:0016070RNA metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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