Annotation of co-expression genes

PH01001881G0090's details annotation

1.Annotation

ICBR annotation: ankyrin repeat domain containing protein, putative, expressed

Blast result AT3G04710 : 1.80E-37
Blast annotation: ankyrin repeat family protein

2.Location

Scaffold: PH01001881
Strand: -

RegionStartEnd
gene7143981608
mRNA7143981608
exon7143971596
exon7184471982
exon7261872770
exon7693277060
exon7849878637
exon7896679097
exon7920979368
exon8024380370
exon8045981608
CDS7157771596
CDS7184471982
CDS7261872770
CDS7693277060
CDS7849878637
CDS7896679097
CDS7920979368
CDS8024380370
CDS8045980681

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000791condensin_complex
GT1 GlycosylTransferases
ferric iron binding,
mitotic_chromosome_condensation
iron-sulfur cluster assembly,
binding,
protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF12796.6Ank_2143227
PF12796.6Ank_2237303

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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