PH01001887G0200's details annotation
1.Annotation
ICBR annotation: RING finger protein, putative, expressed
Blast result AT3G58720 : 3.90E-18
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01001887
Strand: +
| Region | Start | End |
| gene | 173558 | 177425 |
| mRNA | 173558 | 177425 |
| exon | 173558 | 175580 |
| exon | 176379 | 176525 |
| exon | 176684 | 176730 |
| exon | 176899 | 177425 |
| CDS | 175461 | 175580 |
| CDS | 176379 | 176525 |
| CDS | 176684 | 176730 |
| CDS | 176899 | 177367 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000963 | RLK-Pelle_LRR-XI-1 (from iTAK) Others Transcription_Regulator(from iTAK) zinc ion binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 199 | 241 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.