PH01001895G0410's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT3G13550 : 2.40E-53
Blast annotation: Ubiquitin-conjugating enzyme family protein
2.Location
Scaffold: PH01001895
Strand: +
| Region | Start | End |
| gene | 274431 | 279649 |
| mRNA | 274431 | 279649 |
| exon | 274431 | 274778 |
| exon | 274983 | 275056 |
| exon | 276125 | 276226 |
| exon | 276742 | 276889 |
| exon | 277037 | 277121 |
| exon | 278001 | 279649 |
| CDS | 274520 | 274778 |
| CDS | 274983 | 275056 |
| CDS | 276125 | 276226 |
| CDS | 276742 | 276889 |
| CDS | 277037 | 277121 |
| CDS | 278001 | 278931 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000460 | drug transmembrane transport, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000976 | acid-amino acid ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 56 | 219 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Protein processing in endoplasmic reticulum | ubiquitin-conjugating enzyme E2 D/E [EC:6.3.2.19] | ko04141 | K06689 |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 D/E [EC:6.3.2.19] | ko04120 | K06689 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.