PH01001896G0140's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G32790 : 5.40E-87
Blast annotation: CTC-interacting domain 11
2.Location
Scaffold: PH01001896
Strand: -
| Region | Start | End |
| gene | 111961 | 115053 |
| mRNA | 111961 | 115053 |
| exon | 111961 | 112094 |
| exon | 112193 | 112254 |
| exon | 113021 | 113089 |
| exon | 113210 | 113257 |
| exon | 113339 | 113398 |
| exon | 113509 | 113621 |
| exon | 113693 | 113765 |
| exon | 113846 | 113966 |
| exon | 114699 | 114775 |
| exon | 114982 | 115053 |
| CDS | 112037 | 112094 |
| CDS | 112193 | 112254 |
| CDS | 113021 | 113089 |
| CDS | 113210 | 113257 |
| CDS | 113339 | 113398 |
| CDS | 113509 | 113621 |
| CDS | 113693 | 113765 |
| CDS | 113846 | 113966 |
| CDS | 114699 | 114775 |
| CDS | 114982 | 114984 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001734 | NAC Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 52 | 106 |
| PF00076.21 | RRM_1 | 141 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.