PH01001896G0300's details annotation
1.Annotation
ICBR annotation: galactosyltransferase family protein, putative, expressed
Blast result AT1G32930 : 4.00E-102
Blast annotation: Galactosyltransferase family protein
2.Location
Scaffold: PH01001896
Strand: -
| Region | Start | End |
| gene | 214589 | 218015 |
| mRNA | 214589 | 218015 |
| exon | 214589 | 214927 |
| exon | 215744 | 215853 |
| exon | 215938 | 216063 |
| exon | 216443 | 216530 |
| exon | 216641 | 216761 |
| exon | 216851 | 216929 |
| exon | 217011 | 217074 |
| exon | 217276 | 217349 |
| exon | 217605 | 218015 |
| CDS | 214776 | 214927 |
| CDS | 215744 | 215853 |
| CDS | 215938 | 216063 |
| CDS | 216443 | 216530 |
| CDS | 216641 | 216761 |
| CDS | 216851 | 216929 |
| CDS | 217011 | 217074 |
| CDS | 217276 | 217349 |
| CDS | 217605 | 217918 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13334.5 | DUF4094 | 16 | 123 |
| PF01762.20 | Galactosyl_T | 137 | 315 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.